STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmdRFormamidase fused to an AraC-type HTH DNA-binding domain. (796 aa)    
Predicted Functional Partners:
h16_B0684
Mg(2+) transport ATPase-related protein.
  
  
 0.618
h16_B0474
Hypothetical protein.
       0.587
fmdA2
Formamidase.
 
    
0.543
h16_B0475
Conserved hypothetical protein.
       0.519
h16_B0071
Conserved hypothetical protein.
 
   
 0.512
h16_A1595
Protein involved in meta-pathway of phenol degradation.
  
   
 0.475
h16_B0472
Hypothetical protein.
       0.449
oxlT
Oxalate / formate antiporter, MFS-type, OFA family; 12 TMHs.
 
  
 0.437
eriC
Chloride channel protein.
  
    0.423
h16_A2687
FOG: FHA domain protein.
  
   
 0.421
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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