STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B0873Gentisate 1,2-dioxygenase. (348 aa)    
Predicted Functional Partners:
h16_A0362
Maleylacetoacetate isomerase.
 
  
 0.955
h16_B0876
3-Hydroxybenzoate 6-hydroxylase.
 
  
 0.909
h16_B0874
Fumarylpyruvate hydrolase.
   
 0.875
h16_B0875
Maleylpyruvate isomerase.
 
  
 0.847
h16_B0738
Predicted ring-cleavage extradiol dioxygenase.
 
   
 0.742
h16_B0428
Putative fumarylpyruvate hydrolase.
 
   
 0.713
h16_B0546
Catechol 2,3-dioxygenase.
 
   
 0.711
h16_A0361
Putative fumarylacetoacetat hydroxylase.
 
   
 0.710
h16_B0623
Amidase related to nicotinamidase.
  
     0.687
nagH
Salicylate-5-hydroxylase small oxygenase component.
 
   
 0.663
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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