STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ipdCIndole-3-pyruvate decarboxylase. (583 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase, Chorismate mutase.
     
 0.773
h16_B1397
Conserved hypothetical protein; Function unknown.
       0.693
h16_B1398
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
 0.692
feaB
Putative phenylacetaldehyde dehydrogenase.
  
 
 0.684
tyrA
Prephenate dehydrogenase.
     
 0.679
h16_A1494
Aspartate/tyrosine/aromatic aminotransferase.
  
  
 0.651
tyrB1
Tyrosine aminotransferase.
  
  
 0.649
h16_B0496
4-Hydroxyphenylacetate-3-hydroxylase.
      
 0.609
acd
1-Aminocyclopropane-1-carboxylate deaminase; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source; Belongs to the ACC deaminase/D-cysteine desulfhydrase family.
      
 0.609
h16_B1400
Transcriptional regulator CRP family.
   
   0.551
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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