STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B2196Hypothetical secreted protein containing a LysM domain. (563 aa)    
Predicted Functional Partners:
h16_B2195
Signal transduction histidine kinase containing CHASE2 sensor domain; 4 TMHs.
 
     0.954
h16_B2197
Response regulator, OmpR-family; REC (residues 5 to 116, 5e-24) with a complete phosphorylation pocket (DD-D46-S80-K95).
 
     0.831
h16_A0082
Fragment of signal transduction histidine kinase.
 
     0.729
fhaB
Filamentous hemagglutinin / adhesin.
 
     0.607
fhaC
Filamentous hemagglutinin activation/secretion protein.
 
     0.529
h16_A3736
Transcriptional regulator, TetR/AcrR-family.
 
    0.491
h16_A0141
Hypothetical membrane associated protein.
  
     0.482
h16_B2198
Conserved hypothetical transmembrane protein; 12 TMHs.
 
     0.481
h16_B2199
Lipopolysaccharide N-acetylglucosaminyl transferase.
 
     0.476
pilY2
Type IV pilus assembly protein, tip-associated adhesin PilY1.
  
     0.468
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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