STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B2216Methyltransferase; Unknown EC_number=2.1.1.-. (256 aa)    
Predicted Functional Partners:
h16_B2217
ABC-type transporter, permease component; 6 TMHs.
       0.582
h16_B2218
ABC-type transporter, ATPase component: NitT family.
  
  
 0.579
h16_B2219
ABC-type transporter, periplasmic component.
       0.554
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.490
h16_B2221
Cytochrome c-type.
 
 
 
 0.464
h16_B1109
Putative dioxygenase, 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.424
tauD1
Taurine catabolism dioxygenase.
       0.411
h16_B2222
Sulfite dehydrogenase precursor (SoxC).
 
   
 0.405
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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