STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B2242Putative oxidoreductase. (589 aa)    
Predicted Functional Partners:
sdhB
Succinate dehydrogenase (Fe-S protein subunit); Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 0.967
h16_B2247
Conserved hypothetical protein; Energy production and conversion.
  
 0.966
sdhC
Succinate dehydrogenase (cytochrome b subunit).
  
 0.955
h16_B2243
Ferredoxin.
 
  
 0.953
h16_B2241
Transcriptional regulator, GntR-family.
    0.948
fumA
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.945
h16_B2244
ABC-type transporter, periplasmic component: TauT family.
 
  
 0.918
fdwB
Tungsten-containing formate dehydrogenase beta subunit.
  
 
 0.889
h16_A2940
Ferredoxin.
  
 
 0.876
h16_B2248
Conserved hypothetical protein.
 
    0.858
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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