Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK14079.1 | SHK14115.1 | SAMN05444391_0041 | SAMN05444391_0042 | Hypothetical protein. | Uncharacterized membrane protein. | 0.567 |
SHK14079.1 | SHK14182.1 | SAMN05444391_0041 | SAMN05444391_0044 | Hypothetical protein. | Hypothetical protein. | 0.516 |
SHK14079.1 | gcvPB | SAMN05444391_0041 | SAMN05444391_0040 | Hypothetical protein. | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.727 |
SHK14079.1 | rpsU | SAMN05444391_0041 | SAMN05444391_0039 | Hypothetical protein. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.664 |
SHK14079.1 | uvrA | SAMN05444391_0041 | SAMN05444391_0043 | Hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.567 |
SHK14115.1 | SHK14079.1 | SAMN05444391_0042 | SAMN05444391_0041 | Uncharacterized membrane protein. | Hypothetical protein. | 0.567 |
SHK14115.1 | SHK14182.1 | SAMN05444391_0042 | SAMN05444391_0044 | Uncharacterized membrane protein. | Hypothetical protein. | 0.697 |
SHK14115.1 | gcvPB | SAMN05444391_0042 | SAMN05444391_0040 | Uncharacterized membrane protein. | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.536 |
SHK14115.1 | rpsU | SAMN05444391_0042 | SAMN05444391_0039 | Uncharacterized membrane protein. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.493 |
SHK14115.1 | uvrA | SAMN05444391_0042 | SAMN05444391_0043 | Uncharacterized membrane protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.773 |
SHK14182.1 | SHK14079.1 | SAMN05444391_0044 | SAMN05444391_0041 | Hypothetical protein. | Hypothetical protein. | 0.516 |
SHK14182.1 | SHK14115.1 | SAMN05444391_0044 | SAMN05444391_0042 | Hypothetical protein. | Uncharacterized membrane protein. | 0.697 |
SHK14182.1 | gcvPB | SAMN05444391_0044 | SAMN05444391_0040 | Hypothetical protein. | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.488 |
SHK14182.1 | rpsU | SAMN05444391_0044 | SAMN05444391_0039 | Hypothetical protein. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.451 |
SHK14182.1 | uvrA | SAMN05444391_0044 | SAMN05444391_0043 | Hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.697 |
gcvPB | SHK14079.1 | SAMN05444391_0040 | SAMN05444391_0041 | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Hypothetical protein. | 0.727 |
gcvPB | SHK14115.1 | SAMN05444391_0040 | SAMN05444391_0042 | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Uncharacterized membrane protein. | 0.536 |
gcvPB | SHK14182.1 | SAMN05444391_0040 | SAMN05444391_0044 | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Hypothetical protein. | 0.488 |
gcvPB | rpsU | SAMN05444391_0040 | SAMN05444391_0039 | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.705 |
gcvPB | uvrA | SAMN05444391_0040 | SAMN05444391_0043 | Glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.536 |
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