STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK23063.1Hypothetical protein. (614 aa)    
Predicted Functional Partners:
SHK25373.1
Modular FeS cluster scaffolding protein NifU.
   
 
 0.906
SHK28109.1
Hypothetical protein.
   
   0.798
SHK19017.1
Peptidase family M28.
 
  
  0.763
SHK46563.1
Protein of unknown function.
 
     0.678
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.667
lig
DNA ligase-1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
     0.653
SHK20171.1
Long-chain acyl-CoA synthetase.
  
 
 0.648
SHK55560.1
Putative serine/threonine protein kinase.
  
     0.642
atpF
F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
     0.616
SHK42753.1
Hypothetical protein.
 
  
 0.613
Your Current Organism:
Thermocrinis minervae
NCBI taxonomy Id: 381751
Other names: Aquificaceae bacterium CR11, Aquificaceae sp. CR11, DSM 19557, T. minervae, Thermocrinis minervae Caldwell et al. 2010, strain CR11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.