Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK26411.1 | SHK26447.1 | SAMN05444391_0484 | SAMN05444391_0485 | Hypothetical protein. | Peptidase_C39 like family protein. | 0.934 |
SHK26411.1 | SHK26482.1 | SAMN05444391_0484 | SAMN05444391_0486 | Hypothetical protein. | Elongation factor Tu GTP binding domain-containing protein. | 0.773 |
SHK26411.1 | SHK26520.1 | SAMN05444391_0484 | SAMN05444391_0487 | Hypothetical protein. | Elongation factor SelB, winged helix. | 0.773 |
SHK26411.1 | SHK26655.1 | SAMN05444391_0484 | SAMN05444391_0491 | Hypothetical protein. | Hypothetical protein. | 0.746 |
SHK26411.1 | SHK26755.1 | SAMN05444391_0484 | SAMN05444391_0494 | Hypothetical protein. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.746 |
SHK26411.1 | acpP | SAMN05444391_0484 | SAMN05444391_0493 | Hypothetical protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.746 |
SHK26411.1 | atpD | SAMN05444391_0484 | SAMN05444391_0489 | Hypothetical protein. | F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.746 |
SHK26411.1 | atpG | SAMN05444391_0484 | SAMN05444391_0488 | Hypothetical protein. | F-type H+-transporting ATPase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.768 |
SHK26411.1 | lpxK | SAMN05444391_0484 | SAMN05444391_0492 | Hypothetical protein. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.746 |
SHK26411.1 | rph | SAMN05444391_0484 | SAMN05444391_0490 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.746 |
SHK26447.1 | SHK26411.1 | SAMN05444391_0485 | SAMN05444391_0484 | Peptidase_C39 like family protein. | Hypothetical protein. | 0.934 |
SHK26447.1 | SHK26482.1 | SAMN05444391_0485 | SAMN05444391_0486 | Peptidase_C39 like family protein. | Elongation factor Tu GTP binding domain-containing protein. | 0.773 |
SHK26447.1 | SHK26520.1 | SAMN05444391_0485 | SAMN05444391_0487 | Peptidase_C39 like family protein. | Elongation factor SelB, winged helix. | 0.773 |
SHK26447.1 | SHK26655.1 | SAMN05444391_0485 | SAMN05444391_0491 | Peptidase_C39 like family protein. | Hypothetical protein. | 0.746 |
SHK26447.1 | SHK26755.1 | SAMN05444391_0485 | SAMN05444391_0494 | Peptidase_C39 like family protein. | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.753 |
SHK26447.1 | acpP | SAMN05444391_0485 | SAMN05444391_0493 | Peptidase_C39 like family protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.781 |
SHK26447.1 | atpD | SAMN05444391_0485 | SAMN05444391_0489 | Peptidase_C39 like family protein. | F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.746 |
SHK26447.1 | atpG | SAMN05444391_0485 | SAMN05444391_0488 | Peptidase_C39 like family protein. | F-type H+-transporting ATPase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.768 |
SHK26447.1 | lpxK | SAMN05444391_0485 | SAMN05444391_0492 | Peptidase_C39 like family protein. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.746 |
SHK26447.1 | rph | SAMN05444391_0485 | SAMN05444391_0490 | Peptidase_C39 like family protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.746 |
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