STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK46868.1Uncharacterized conserved protein YbgA, DUF1722 family. (313 aa)    
Predicted Functional Partners:
SHK48130.1
Deoxyribodipyrimidine photo-lyase type II.
 
  
 0.964
nadA
Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.820
SHK46843.1
Hypothetical protein.
       0.773
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.773
SHK46924.1
Hypothetical protein.
       0.773
SHK46943.1
N-acetylmuramoyl-L-alanine amidase.
       0.773
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
       0.709
SHK46795.1
Predicted dehydrogenase.
       0.709
SHK46625.1
Hypothetical protein.
 
    0.679
SHK46682.1
Lipopolysaccharide export system ATP-binding protein.
       0.525
Your Current Organism:
Thermocrinis minervae
NCBI taxonomy Id: 381751
Other names: Aquificaceae bacterium CR11, Aquificaceae sp. CR11, DSM 19557, T. minervae, Thermocrinis minervae Caldwell et al. 2010, strain CR11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.