STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KK1_042976Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1. (299 aa)    
Predicted Functional Partners:
KK1_004593
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.806
KK1_017235
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.806
KK1_035508
Uncharacterized protein.
    
 0.709
KK1_013812
Uncharacterized protein.
    
 0.671
KK1_018226
Uncharacterized protein.
    
 0.671
KK1_018885
Transcription elongation factor SPT4 isogeny 2.
    
 0.669
KK1_021553
DNA-directed RNA polymerase II subunit RPB11.
    
 0.665
KK1_028456
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.653
KK1_014357
DNA-directed RNA polymerase II subunit RPB3-A.
    
 0.653
KK1_031667
Lipin-3.
    
 0.638
Your Current Organism:
Cajanus cajan
NCBI taxonomy Id: 3821
Other names: C. cajan, Cajanus cajan (L.) Millsp., pigeon pea
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