STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KK1_043022DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)    
Predicted Functional Partners:
KK1_021553
DNA-directed RNA polymerase II subunit RPB11.
   
 0.988
KK1_007598
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.971
KK1_008159
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.971
KK1_009274
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.969
KK1_037079
DNA-directed RNA polymerase II subunit RPB4.
   
 0.967
KK1_014357
DNA-directed RNA polymerase II subunit RPB3-A.
   
 0.967
KK1_018885
Transcription elongation factor SPT4 isogeny 2.
   
 0.960
KK1_001871
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.951
KK1_018726
DNA-directed RNA polymerase I subunit rpa43.
   
 0.932
KK1_004896
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 0.928
Your Current Organism:
Cajanus cajan
NCBI taxonomy Id: 3821
Other names: C. cajan, Cajanus cajan (L.) Millsp., pigeon pea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.