Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDY80914.1 | EDY84331.1 | VDG1235_531 | VDG1235_3962 | Acetyltransferase, GNAT family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | 0.729 |
| EDY80914.1 | ligA | VDG1235_531 | VDG1235_1079 | Acetyltransferase, GNAT family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.552 |
| EDY81254.1 | EDY81421.1 | VDG1235_872 | VDG1235_1039 | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | NOL1/NOP2/sun family, putative; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.668 |
| EDY81254.1 | EDY84317.1 | VDG1235_872 | VDG1235_3948 | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.775 |
| EDY81254.1 | ligA | VDG1235_872 | VDG1235_1079 | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.753 |
| EDY81254.1 | murB | VDG1235_872 | VDG1235_152 | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | UDP-N-acetylenolpyruvoylglucosamine reductase, putative; Cell wall formation. | 0.406 |
| EDY81254.1 | ruvB | VDG1235_872 | VDG1235_1899 | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.451 |
| EDY81421.1 | EDY81254.1 | VDG1235_1039 | VDG1235_872 | NOL1/NOP2/sun family, putative; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.668 |
| EDY81421.1 | ligA | VDG1235_1039 | VDG1235_1079 | NOL1/NOP2/sun family, putative; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.822 |
| EDY81421.1 | ruvB | VDG1235_1039 | VDG1235_1899 | NOL1/NOP2/sun family, putative; [J] COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.461 |
| EDY82454.1 | ligA | VDG1235_2076 | VDG1235_1079 | [L] COG1793 ATP-dependent DNA ligase. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.781 |
| EDY82458.1 | EDY84317.1 | VDG1235_2080 | VDG1235_3948 | [L] COG0587 DNA polymerase III, alpha subunit; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.518 |
| EDY82458.1 | ligA | VDG1235_2080 | VDG1235_1079 | [L] COG0587 DNA polymerase III, alpha subunit; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.580 |
| EDY84317.1 | EDY81254.1 | VDG1235_3948 | VDG1235_872 | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | UvrD/REP helicase subfamily; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.775 |
| EDY84317.1 | EDY82458.1 | VDG1235_3948 | VDG1235_2080 | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | [L] COG0587 DNA polymerase III, alpha subunit; Belongs to the DNA polymerase type-C family. DnaE2 subfamily. | 0.518 |
| EDY84317.1 | ligA | VDG1235_3948 | VDG1235_1079 | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.574 |
| EDY84317.1 | murB | VDG1235_3948 | VDG1235_152 | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | UDP-N-acetylenolpyruvoylglucosamine reductase, putative; Cell wall formation. | 0.433 |
| EDY84317.1 | ruvB | VDG1235_3948 | VDG1235_1899 | UvrC Helix-hairpin-helix N-terminal domain family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.582 |
| EDY84331.1 | EDY80914.1 | VDG1235_3962 | VDG1235_531 | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | Acetyltransferase, GNAT family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. | 0.729 |
| EDY84331.1 | leuS | VDG1235_3962 | VDG1235_2285 | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | [J] COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.822 |
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