STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY81493.1Hypothetical protein. (515 aa)    
Predicted Functional Partners:
EDY82784.1
Fibronectin type III domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.827
EDY84776.1
[S] COG4805 Uncharacterized protein conserved in bacteria.
       0.642
EDY84572.1
Ricin-type beta-trefoil lectin domain protein; [G] COG2730 Endoglucanase.
 
 
  0.550
EDY84096.1
Regulator of chromosome condensation domain protein; [DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins.
  
  
  0.515
EDY85195.1
Hypothetical protein.
 
  
 
0.487
EDY83065.1
Hypothetical protein; [S] COG2930 Uncharacterized conserved protein.
       0.484
EDY84376.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.465
EDY83940.1
Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.463
EDY83585.1
Carbohydrate binding module (family 6); [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
 
  0.462
EDY80836.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.454
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.