STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY81554.1TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport. (788 aa)    
Predicted Functional Partners:
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.811
EDY84481.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.713
EDY84018.1
TonB-dependent receptor domain protein.
  
    0.686
EDY84353.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.686
EDY85274.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.668
EDY82408.1
TonB-dependent siderophore receptor subfamily; [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
    0.646
EDY81843.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.637
EDY81760.1
Sperm-activating peptides family; [MU] COG3468 Type V secretory pathway, adhesin AidA.
  
    0.601
EDY81567.1
Sigma factor regulatory protein, FecR/PupR family; [PT] COG3712 Fe2+-dicitrate sensor, membrane component.
 
  
 0.596
EDY80690.1
TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
    0.595
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.