STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY81792.1D-mannonate dehydratase (UxuA) superfamily; Catalyzes the dehydration of D-mannonate. (355 aa)    
Predicted Functional Partners:
uxaC
[G] COG1904 Glucuronate isomerase.
 
  
 0.966
EDY81923.1
KR domain superfamily; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.883
EDY83131.1
Kinase, pfkB family; [G] COG0524 Sugar kinases, ribokinase family.
 
  
 0.853
EDY83542.1
Oxidoreductase, short chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.812
EDY85044.1
[G] COG0698 Ribose 5-phosphate isomerase RpiB.
   
 
  0.741
kduI
5-keto 4-deoxyuronate isomerase superfamily; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.611
EDY83255.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase subfamily; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.587
EDY80452.1
KR domain superfamily; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 
 0.578
EDY81142.1
Kinase, pfkB family; [G] COG0524 Sugar kinases, ribokinase family.
 
  
 0.577
EDY85154.1
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.547
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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