STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY82213.1Transcriptional regulator, GntR family protein; [K] COG1725 Predicted transcriptional regulators. (126 aa)    
Predicted Functional Partners:
EDY83198.1
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
    0.846
EDY80491.1
Conserved hypothetical protein; [K] COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.586
EDY82615.1
Hypothetical protein.
       0.539
EDY82168.1
Hypothetical protein; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism.
   
    0.499
EDY84923.1
Beta-lactamase, putative; [V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.442
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.