STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY82339.1Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases. (250 aa)    
Predicted Functional Partners:
EDY82760.1
RNA methyltransferase, TrmH family; [J] COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.776
EDY81205.1
TonB-dependent receptor plug domain protein; [P] COG4774 Outer membrane receptor for monomeric catechols.
  
     0.717
EDY82688.1
TonB-dependent receptor plug domain protein; [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
     0.712
EDY83923.1
TonB-dependent receptor plug domain protein; [P] COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
  
     0.706
EDY82083.1
Hypothetical protein.
  
     0.696
EDY84869.1
Hypothetical protein.
  
     0.680
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
  0.677
EDY84948.1
Hypothetical protein.
  
     0.667
EDY80795.1
Hypothetical protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.662
EDY82978.1
Hypothetical protein.
  
    0.658
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.