Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDY81567.1 | EDY82452.1 | VDG1235_1185 | VDG1235_2074 | Sigma factor regulatory protein, FecR/PupR family; [PT] COG3712 Fe2+-dicitrate sensor, membrane component. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.425 |
| EDY81640.1 | EDY82452.1 | VDG1235_1258 | VDG1235_2074 | Hypothetical protein. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.473 |
| EDY81891.1 | EDY82452.1 | VDG1235_1511 | VDG1235_2074 | Hypothetical protein. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.415 |
| EDY82452.1 | EDY81567.1 | VDG1235_2074 | VDG1235_1185 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Sigma factor regulatory protein, FecR/PupR family; [PT] COG3712 Fe2+-dicitrate sensor, membrane component. | 0.425 |
| EDY82452.1 | EDY81640.1 | VDG1235_2074 | VDG1235_1258 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.473 |
| EDY82452.1 | EDY81891.1 | VDG1235_2074 | VDG1235_1511 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.415 |
| EDY82452.1 | EDY82519.1 | VDG1235_2074 | VDG1235_2142 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | [S] COG3528 Uncharacterized protein conserved in bacteria. | 0.737 |
| EDY82452.1 | rpoB | VDG1235_2074 | VDG1235_990 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.427 |
| EDY82452.1 | rpoC | VDG1235_2074 | VDG1235_4661 | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.437 |
| EDY82519.1 | EDY82452.1 | VDG1235_2142 | VDG1235_2074 | [S] COG3528 Uncharacterized protein conserved in bacteria. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.737 |
| rpoB | EDY82452.1 | VDG1235_990 | VDG1235_2074 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.427 |
| rpoB | rpoC | VDG1235_990 | VDG1235_4661 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoC | EDY82452.1 | VDG1235_4661 | VDG1235_2074 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.437 |
| rpoC | rpoB | VDG1235_4661 | VDG1235_990 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |