Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDY81984.1 | EDY82145.1 | VDG1235_1604 | VDG1235_1765 | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | Hypothetical protein. | 0.957 |
EDY81984.1 | EDY82485.1 | VDG1235_1604 | VDG1235_2108 | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | Type III restriction enzyme, res subunit family; [KL] COG1061 DNA or RNA helicases of superfamily II. | 0.944 |
EDY81984.1 | EDY83680.1 | VDG1235_1604 | VDG1235_3307 | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | Hypothetical protein. | 0.949 |
EDY81984.1 | EDY83891.1 | VDG1235_1604 | VDG1235_3518 | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | Type III restriction enzyme, res subunit family; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.875 |
EDY81984.1 | EDY84546.1 | VDG1235_1604 | VDG1235_4177 | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | Hypothetical protein. | 0.990 |
EDY82145.1 | EDY81984.1 | VDG1235_1765 | VDG1235_1604 | Hypothetical protein. | TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat. | 0.957 |
EDY82145.1 | EDY82454.1 | VDG1235_1765 | VDG1235_2076 | Hypothetical protein. | [L] COG1793 ATP-dependent DNA ligase. | 0.830 |
EDY82145.1 | EDY82485.1 | VDG1235_1765 | VDG1235_2108 | Hypothetical protein. | Type III restriction enzyme, res subunit family; [KL] COG1061 DNA or RNA helicases of superfamily II. | 0.951 |
EDY82145.1 | EDY83680.1 | VDG1235_1765 | VDG1235_3307 | Hypothetical protein. | Hypothetical protein. | 0.897 |
EDY82145.1 | EDY83891.1 | VDG1235_1765 | VDG1235_3518 | Hypothetical protein. | Type III restriction enzyme, res subunit family; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.858 |
EDY82145.1 | EDY84546.1 | VDG1235_1765 | VDG1235_4177 | Hypothetical protein. | Hypothetical protein. | 0.908 |
EDY82145.1 | rpoA | VDG1235_1765 | VDG1235_3119 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.428 |
EDY82454.1 | EDY82145.1 | VDG1235_2076 | VDG1235_1765 | [L] COG1793 ATP-dependent DNA ligase. | Hypothetical protein. | 0.830 |
EDY82454.1 | EDY82485.1 | VDG1235_2076 | VDG1235_2108 | [L] COG1793 ATP-dependent DNA ligase. | Type III restriction enzyme, res subunit family; [KL] COG1061 DNA or RNA helicases of superfamily II. | 0.927 |
EDY82454.1 | EDY83891.1 | VDG1235_2076 | VDG1235_3518 | [L] COG1793 ATP-dependent DNA ligase. | Type III restriction enzyme, res subunit family; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.950 |
EDY82454.1 | EDY84546.1 | VDG1235_2076 | VDG1235_4177 | [L] COG1793 ATP-dependent DNA ligase. | Hypothetical protein. | 0.895 |
EDY82454.1 | EDY84955.1 | VDG1235_2076 | VDG1235_4589 | [L] COG1793 ATP-dependent DNA ligase. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.949 |
EDY82454.1 | EDY85094.1 | VDG1235_2076 | VDG1235_4729 | [L] COG1793 ATP-dependent DNA ligase. | Hypothetical protein. | 0.949 |
EDY82454.1 | rpoA | VDG1235_2076 | VDG1235_3119 | [L] COG1793 ATP-dependent DNA ligase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
EDY82454.1 | rpoB | VDG1235_2076 | VDG1235_990 | [L] COG1793 ATP-dependent DNA ligase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.955 |
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