STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY82765.1dUTPase superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (123 aa)    
Predicted Functional Partners:
EDY82957.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.730
EDY85290.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.721
EDY83912.1
Hydrolase, NUDIX family, putative; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
    0.715
EDY81862.1
OstA-like protein; [M] COG1452 Organic solvent tolerance protein OstA.
  
     0.664
EDY82795.1
Hypothetical protein.
  
     0.663
EDY84318.1
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
  
     0.642
greA
Transcription elongation factor GreA domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
     0.635
EDY83529.1
LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.
  
     0.625
EDY82096.1
Hydrolase, NUDIX family, putative; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
    0.589
EDY82963.1
Hypothetical protein.
  
     0.578
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.