STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83215.1Tetratricopeptide repeat domain protein; [P] COG0155 Sulfite reductase, beta subunit (hemoprotein). (432 aa)    
Predicted Functional Partners:
EDY82893.1
[M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
     0.922
EDY81596.1
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
     0.832
EDY81427.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
 
     0.822
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.727
EDY81159.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
  
     0.656
EDY83744.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
  
     0.652
EDY83190.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
 
     0.645
EDY84683.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
  
     0.621
EDY83509.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
  
     0.573
EDY83276.1
[C] COG2421 Predicted acetamidase/formamidase.
       0.527
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.