STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY80668.1Hypothetical protein; [E] COG0421 Spermidine synthase. (233 aa)    
Predicted Functional Partners:
EDY83671.1
Hydrolase, carbon-nitrogen family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
 
 0.701
EDY85112.1
[N] COG1868 Flagellar motor switch protein.
    
   0.643
EDY82527.1
Agmatinase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.602
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.504
EDY82265.1
Phosphorylases family 2; [F] COG0005 Purine nucleoside phosphorylase.
  
 
 0.478
EDY81437.1
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; [E] COG0019 Diaminopimelate decarboxylase.
  
 0.466
EDY83446.1
[E] COG0019 Diaminopimelate decarboxylase.
  
 0.466
EDY84530.1
FAD dependent oxidoreductase, putative; [E] COG1231 Monoamine oxidase.
    
 0.457
argD
Acetylornithine and succinylornithine aminotransferases subfamily; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
     
 0.439
EDY82554.1
[E] COG1748 Saccharopine dehydrogenase and related proteins.
    
  0.409
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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