STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (301 aa)    
Predicted Functional Partners:
EDY82593.1
[O] COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
 
 0.994
EDY82944.1
[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 0.992
EDY85219.1
[C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
 
 
 0.989
EDY82942.1
[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
 
 0.987
EDY80854.1
[C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
 
 0.972
EDY82725.1
Conserved hypothetical protein; [S] COG2322 Predicted membrane protein.
 
    0.923
EDY83363.1
[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
 0.888
EDY84048.1
SCO1/SenC superfamily; [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
 
  
 0.821
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.781
EDY84632.1
[C] COG2010 Cytochrome c, mono- and diheme variants.
  
 
 0.727
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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