STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83455.1SMP-30/Gluconolaconase/LRE-like region family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (427 aa)    
Predicted Functional Partners:
EDY84138.1
Cytochrome c subfamily, putative; [G] COG4993 Glucose dehydrogenase.
  
  
 0.768
EDY82547.1
Hypothetical protein.
  
   0.723
EDY81625.1
Hypothetical protein; [C] COG2010 Cytochrome c, mono- and diheme variants.
  
  
  0.589
EDY84893.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.580
EDY84761.1
Putative Ig domain family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
  0.534
EDY82394.1
Hypothetical protein; [G] COG2133 Glucose/sorbosone dehydrogenases.
  
  
 0.525
EDY84477.1
Hypothetical protein.
  
     0.510
EDY80658.1
Hypothetical protein.
  
     0.506
EDY83795.1
[G] COG2133 Glucose/sorbosone dehydrogenases.
  
  
 0.506
EDY82641.1
Glycosyl hydrolases family 8; [G] COG3405 Endoglucanase Y.
  
     0.502
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.