Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDY81383.1 | EDY85293.1 | VDG1235_1001 | VDG1235_4928 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.537 |
| EDY81383.1 | rnpA | VDG1235_1001 | VDG1235_3259 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.624 |
| EDY81383.1 | rplQ | VDG1235_1001 | VDG1235_2040 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | [J] COG0203 Ribosomal protein L17. | 0.705 |
| EDY81383.1 | secE | VDG1235_1001 | VDG1235_4804 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.991 |
| EDY81383.1 | secF | VDG1235_1001 | VDG1235_3690 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein-export membrane protein SecD, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.991 |
| EDY81383.1 | secY | VDG1235_1001 | VDG1235_2768 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.978 |
| EDY81383.1 | yidC | VDG1235_1001 | VDG1235_3203 | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.957 |
| EDY83973.1 | EDY85219.1 | VDG1235_3600 | VDG1235_4854 | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2. | 0.425 |
| EDY83973.1 | rplQ | VDG1235_3600 | VDG1235_2040 | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | [J] COG0203 Ribosomal protein L17. | 0.483 |
| EDY83973.1 | secF | VDG1235_3600 | VDG1235_3690 | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | Protein-export membrane protein SecD, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.510 |
| EDY83973.1 | secY | VDG1235_3600 | VDG1235_2768 | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.820 |
| EDY83973.1 | yidC | VDG1235_3600 | VDG1235_3203 | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | 60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.917 |
| EDY85219.1 | EDY83973.1 | VDG1235_4854 | VDG1235_3600 | [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2. | [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K. | 0.425 |
| EDY85219.1 | yidC | VDG1235_4854 | VDG1235_3203 | [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2. | 60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.877 |
| EDY85293.1 | EDY81383.1 | VDG1235_4928 | VDG1235_1001 | Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Preprotein translocase, SecG subunit, putative; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.537 |
| EDY85293.1 | rnpA | VDG1235_4928 | VDG1235_3259 | Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.950 |
| EDY85293.1 | secE | VDG1235_4928 | VDG1235_4804 | Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.857 |
| EDY85293.1 | yidC | VDG1235_4928 | VDG1235_3203 | Conserved hypothetical protein TIGR00278, putative; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.871 |
| lgt | secF | VDG1235_1032 | VDG1235_3690 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Protein-export membrane protein SecD, putative; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.664 |
| lgt | yidC | VDG1235_1032 | VDG1235_3203 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 60Kd inner membrane protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.844 |
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