STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83592.1Ferritin-like domain subfamily; Iron-storage protein. (188 aa)    
Predicted Functional Partners:
EDY82134.1
Oxidoreductase, nitrogenase component 1 and other families superfamily; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.
       0.705
EDY81650.1
Nitrogenase MoFe cofactor biosynthesis protein NifE; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.
       0.601
EDY84050.1
Oxidoreductase, nitrogenase component 1 and other families superfamily; [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.
       0.601
EDY82870.1
Nitrogenase cofactor biosynthesis protein NifB; [R] COG0535 Predicted Fe-S oxidoreductases.
       0.593
EDY82516.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.538
EDY84643.1
HMGL-like domain protein; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.494
EDY80994.1
Hypothetical protein; [C] COG3411 Ferredoxin.
       0.494
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.478
EDY84191.1
[C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
       0.444
EDY83887.1
FeoA domain superfamily; [P] COG1918 Fe2+ transport system protein A.
     
 0.408
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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