Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDY80947.1 | EDY82087.1 | VDG1235_564 | VDG1235_1707 | [S] COG1302 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.712 |
EDY80947.1 | EDY83638.1 | VDG1235_564 | VDG1235_3265 | [S] COG1302 Uncharacterized protein conserved in bacteria. | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | 0.482 |
EDY82087.1 | EDY80947.1 | VDG1235_1707 | VDG1235_564 | Hypothetical protein. | [S] COG1302 Uncharacterized protein conserved in bacteria. | 0.712 |
EDY82087.1 | EDY83638.1 | VDG1235_1707 | VDG1235_3265 | Hypothetical protein. | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | 0.532 |
EDY83638.1 | EDY80947.1 | VDG1235_3265 | VDG1235_564 | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | [S] COG1302 Uncharacterized protein conserved in bacteria. | 0.482 |
EDY83638.1 | EDY82087.1 | VDG1235_3265 | VDG1235_1707 | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | Hypothetical protein. | 0.532 |
EDY83638.1 | EDY85110.1 | VDG1235_3265 | VDG1235_4745 | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | Hypothetical protein; [F] COG0125 Thymidylate kinase. | 0.448 |
EDY85110.1 | EDY83638.1 | VDG1235_4745 | VDG1235_3265 | Hypothetical protein; [F] COG0125 Thymidylate kinase. | Transposase, IS4 family protein; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit. | 0.448 |