STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83677.1Transcriptional regulator, lacI family protein; [F] COG0125 Thymidylate kinase. (331 aa)    
Predicted Functional Partners:
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 
 0.791
EDY81384.1
Hypothetical protein.
       0.773
EDY84996.1
Hypothetical protein; [K] COG1609 Transcriptional regulators; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
  
     0.773
EDY85110.1
Hypothetical protein; [F] COG0125 Thymidylate kinase.
  
     0.771
EDY82766.1
[E] COG0069 Glutamate synthase domain 2.
    
 
 0.670
EDY84130.1
[E] COG0069 Glutamate synthase domain 2.
    
 
 0.670
EDY83571.1
Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.584
EDY82356.1
Bacterial extracellular solute-binding protein, putative; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.486
EDY80904.1
Phosphocarrier, HPr family; [G] COG1925 Phosphotransferase system, HPr-related proteins.
   
 
 0.485
EDY82606.1
Hypothetical protein; [G] COG1879 ABC-type sugar transport system, periplasmic component; Periplasmic binding proteins and sugar binding domain of the LacI family, putative.
 
 
 0.478
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.