STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83722.1[E] COG0531 Amino acid transporters. (671 aa)    
Predicted Functional Partners:
EDY83571.1
Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
   
 0.957
nadE
NAD synthase family; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.789
EDY82455.1
[E] COG0077 Prephenate dehydratase.
   
 0.701
EDY81281.1
PAS fold family; [T] COG2202 FOG: PAS/PAC domain.
  
 
 0.679
EDY83086.1
PAS fold family; [T] COG2202 FOG: PAS/PAC domain.
  
 
 0.669
EDY80426.1
PAS fold family; [T] COG2202 FOG: PAS/PAC domain.
 
 
 0.652
EDY84334.1
PAS fold family; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.637
EDY81984.1
TonB family C-terminal domain protein; [R] COG0666 FOG: Ankyrin repeat.
 
 
 0.628
EDY80449.1
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.628
EDY85031.1
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; [T] COG0642 Signal transduction histidine kinase.
   
 
 0.589
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.