STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83748.1Peptidase, M61 (glycyl aminopeptidase) family protein; [R] COG3975 Predicted protease with the C-terminal PDZ domain. (628 aa)    
Predicted Functional Partners:
EDY83181.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.700
EDY83180.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.679
EDY84364.1
Bacterial transferase hexapeptide repeat protein; [R] COG0110 Acetyltransferase (isoleucine patch superfamily).
       0.588
EDY80951.1
ABC transporter, ATP-binding protein; [R] COG4152 ABC-type uncharacterized transport system, ATPase component.
 
     0.535
EDY82329.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.531
EDY82495.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.523
EDY82867.1
ABC-2 type transporter family; [CP] COG1668 ABC-type Na+ efflux pump, permease component.
 
     0.522
EDY82457.1
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.520
EDY83502.1
TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.473
EDY82854.1
PepSY-associated TM helix family; [S] COG3295 Uncharacterized protein conserved in bacteria.
  
     0.435
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.