STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83778.1Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat. (434 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.727
EDY82893.1
[M] COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
     0.717
EDY81159.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
 
     0.643
EDY83744.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
 
     0.628
EDY84683.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
  
     0.627
EDY81427.1
Transporter, MotA/TolQ/ExbB proton channel family protein; [U] COG0811 Biopolymer transport proteins.
 
     0.593
EDY84181.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.570
EDY84043.1
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
 
     0.567
EDY83082.1
Aminotransferase, classes I and II superfamily; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
       0.563
EDY83586.1
Transport energizing protein, ExbD/TolR family; [U] COG0848 Biopolymer transport protein.
 
     0.554
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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