STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY83821.1Hypothetical protein; Belongs to the cytochrome c-552 family. (449 aa)    
Predicted Functional Partners:
EDY82635.1
BFD-like (2Fe-2S) binding domain family; [C] COG1251 NAD(P)H-nitrite reductase.
 
 
 0.930
EDY81808.1
Hypothetical protein.
 
     0.882
EDY82788.1
[C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit.
  
 0.880
EDY82387.1
Globin, putative; [C] COG1017 Hemoglobin-like flavoprotein; Belongs to the globin family.
 
   
 0.862
EDY84564.1
[C] COG3245 Cytochrome c5.
 
   
 0.612
EDY83839.1
4Fe-4S binding domain protein; [C] COG0437 Fe-S-cluster-containing hydrogenase components 1.
 
 
 0.591
EDY81587.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.537
EDY81760.1
Sperm-activating peptides family; [MU] COG3468 Type V secretory pathway, adhesin AidA.
  
     0.526
EDY83827.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Leucine rich repeat variant.
  
     0.514
EDY82484.1
GAF domain protein; [M] COG0845 Membrane-fusion protein.
  
     0.504
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.