STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY80730.1(NiFe) hydrogenase maturation protein HypF; [O] COG0068 Hydrogenase maturation factor. (774 aa)    
Predicted Functional Partners:
EDY83796.1
Hydrogenase expression/formation protein HypE; [O] COG0309 Hydrogenase maturation factor.
 
 
 0.996
EDY81032.1
Hydrogenase expression/formation protein HypD; [O] COG0409 Hydrogenase maturation factor.
 
  
 0.973
EDY81246.1
Hydrogenase assembly chaperone HypC/HupF; [O] COG0298 Hydrogenase maturation factor.
 
 
 0.973
EDY81400.1
Nickel-dependent hydrogenase superfamily; [C] COG3259 Coenzyme F420-reducing hydrogenase, alpha subunit.
 
   
 0.851
EDY84626.1
[C] COG0680 Ni,Fe-hydrogenase maturation factor.
 
   
 0.847
EDY82694.1
[R] COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression).
     
 0.825
EDY81453.1
NADH ubiquinone oxidoreductase, 20 Kd subunit family; [C] COG1941 Coenzyme F420-reducing hydrogenase, gamma subunit.
  
  
 0.785
EDY81434.1
Oxidoreductase NAD-binding domain protein; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
     
 0.761
EDY83239.1
4Fe-4S binding domain protein; [C] COG1145 Ferredoxin.
     
 0.666
EDY80946.1
Cyclic nucleotide-binding domain protein.
       0.630
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.