STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84004.1NAD binding domain of 6-phosphogluconate dehydrogenase family; [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases. (291 aa)    
Predicted Functional Partners:
EDY84331.1
[C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
 
  0.858
EDY80517.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
 
  0.828
EDY80633.1
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
    
  0.800
EDY80889.1
Aldehyde dehydrogenase (NAD) family protein; [E] COG0506 Proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.783
EDY84613.1
Carboxymuconolactone decarboxylase family protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
 
 0.758
EDY84244.1
Acetyltransferase, GNAT family; [C] COG1042 Acyl-CoA synthetase (NDP forming).
    
  0.747
EDY82634.1
Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.745
EDY82444.1
Acyl-CoA dehydrogenase, C-terminal domain protein; [I] COG1960 Acyl-CoA dehydrogenases.
  
 
 0.569
EDY83897.1
Hydrolase, alpha/beta fold family, putative; [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.569
EDY84478.1
AP endonuclease, family 2; [G] COG3622 Hydroxypyruvate isomerase.
  
 
 0.557
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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