STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84110.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
EDY83508.1
Hypothetical protein.
       0.773
EDY81507.1
Bacterial type II and III secretion system protein; [NU] COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
       0.615
EDY82270.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
       0.566
EDY84654.1
Hypothetical protein.
       0.566
EDY84221.1
[L] COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
       0.448
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.