STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84185.1Glycosyl hydrolase, family 43; [R] COG3940 Predicted beta-xylosidase. (653 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.848
EDY85258.1
Alpha-L-arabinofuranosidase C-terminal domain family; [G] COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.798
EDY82253.1
Oxidoreductase family, NAD-binding Rossmann fold protein; [R] COG0673 Predicted dehydrogenases and related proteins.
    
  0.774
EDY81360.1
Glycosyl hydrolase, family 43; [G] COG3507 Beta-xylosidase.
  
     0.768
EDY82787.1
Glycosyl hydrolase, family 43; [R] COG3940 Predicted beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.754
EDY81218.1
Alpha-L-arabinofuranosidase C-terminal domain family; [G] COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.752
EDY83711.1
Glycosyl Hydrolase Family 88 superfamily; [R] COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
     0.741
EDY84343.1
FG-GAP repeat domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
  0.739
EDY82143.1
Hypothetical protein; [G] COG3507 Beta-xylosidase.
  
     0.733
uxaC
[G] COG1904 Glucuronate isomerase.
     
 0.720
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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