STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84295.1TonB-dependent receptor plug domain protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport. (1187 aa)    
Predicted Functional Partners:
EDY83103.1
Hypothetical protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases.
  
     0.773
EDY80676.1
Carbohydrate binding domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.764
EDY81129.1
HDOD domain family; [T] COG0784 FOG: CheY-like receiver.
  
     0.760
EDY85176.1
Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.
  
     0.758
EDY82439.1
Hypothetical protein; [N] COG1419 Flagellar GTP-binding protein.
  
     0.745
EDY81567.1
Sigma factor regulatory protein, FecR/PupR family; [PT] COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.721
EDY85277.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.721
EDY84503.1
Hypothetical protein.
  
     0.711
EDY83007.1
Papain family cysteine protease, putative; [O] COG4870 Cysteine protease.
  
     0.686
EDY80590.1
POTRA domain, FtsQ-type family; Essential cell division protein.
  
     0.679
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.