STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84313.1Hypothetical protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (160 aa)    
Predicted Functional Partners:
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 
 0.916
EDY82766.1
[E] COG0069 Glutamate synthase domain 2.
    
  0.764
EDY84130.1
[E] COG0069 Glutamate synthase domain 2.
    
  0.764
lpxC
UDP-3-O-acyl N-acetylglycosamine deacetylase, putative; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
     
 0.695
EDY83629.1
ExsB family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 
 0.656
EDY81477.1
[Q] COG2124 Cytochrome P450.
  
 0.615
EDY82091.1
[I] COG1398 Fatty-acid desaturase.
  
 0.528
EDY85163.1
Transporter, major facilitator family, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.452
EDY82140.1
[H] COG0157 Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
  
    0.434
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
 
  
  0.434
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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