STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84355.1Endonuclease/exonuclease/phosphatase family; [R] COG3568 Metal-dependent hydrolase. (278 aa)    
Predicted Functional Partners:
EDY82581.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.758
EDY81182.1
Aminotransferase, class V superfamily; [E] COG0520 Selenocysteine lyase.
    
   0.758
EDY82493.1
[H] COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
      0.580
EDY83571.1
Alpha amylase, catalytic domain subfamily, putative; [G] COG0366 Glycosidases; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.576
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.538
nagB
Glucosamine-6-phosphate isomerase, putative; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
  
  0.526
EDY84234.1
[S] COG2898 Uncharacterized conserved protein.
  
  
 0.520
EDY80514.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
  0.496
EDY83622.1
[I] COG2272 Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
 
      0.482
EDY80734.1
FAD binding domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases.
       0.482
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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