Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDY80863.1 | EDY82397.1 | VDG1235_480 | VDG1235_2019 | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | 0.723 |
EDY80863.1 | EDY84002.1 | VDG1235_480 | VDG1235_3629 | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Hypothetical protein. | 0.561 |
EDY80863.1 | EDY84448.1 | VDG1235_480 | VDG1235_4079 | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | Hypothetical protein. | 0.534 |
EDY81905.1 | EDY84448.1 | VDG1235_1525 | VDG1235_4079 | FAD linked oxidase, C-terminal domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases. | Hypothetical protein. | 0.406 |
EDY81905.1 | murJ | VDG1235_1525 | VDG1235_1409 | FAD linked oxidase, C-terminal domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases. | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.550 |
EDY82397.1 | EDY80863.1 | VDG1235_2019 | VDG1235_480 | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.723 |
EDY82397.1 | EDY84002.1 | VDG1235_2019 | VDG1235_3629 | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | Hypothetical protein. | 0.528 |
EDY82397.1 | EDY84448.1 | VDG1235_2019 | VDG1235_4079 | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | Hypothetical protein. | 0.502 |
EDY84002.1 | EDY80863.1 | VDG1235_3629 | VDG1235_480 | Hypothetical protein. | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.561 |
EDY84002.1 | EDY82397.1 | VDG1235_3629 | VDG1235_2019 | Hypothetical protein. | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | 0.528 |
EDY84002.1 | EDY84448.1 | VDG1235_3629 | VDG1235_4079 | Hypothetical protein. | Hypothetical protein. | 0.732 |
EDY84002.1 | murJ | VDG1235_3629 | VDG1235_1409 | Hypothetical protein. | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.526 |
EDY84448.1 | EDY80863.1 | VDG1235_4079 | VDG1235_480 | Hypothetical protein. | Polyprenyl synthetase superfamily; [H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.534 |
EDY84448.1 | EDY81905.1 | VDG1235_4079 | VDG1235_1525 | Hypothetical protein. | FAD linked oxidase, C-terminal domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases. | 0.406 |
EDY84448.1 | EDY82397.1 | VDG1235_4079 | VDG1235_2019 | Hypothetical protein. | Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases. | 0.502 |
EDY84448.1 | EDY84002.1 | VDG1235_4079 | VDG1235_3629 | Hypothetical protein. | Hypothetical protein. | 0.732 |
EDY84448.1 | murJ | VDG1235_4079 | VDG1235_1409 | Hypothetical protein. | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.553 |
murJ | EDY81905.1 | VDG1235_1409 | VDG1235_1525 | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | FAD linked oxidase, C-terminal domain protein; [C] COG0277 FAD/FMN-containing dehydrogenases. | 0.550 |
murJ | EDY84002.1 | VDG1235_1409 | VDG1235_3629 | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | Hypothetical protein. | 0.526 |
murJ | EDY84448.1 | VDG1235_1409 | VDG1235_4079 | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | Hypothetical protein. | 0.553 |