STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84532.1Ribosomal subunit interface protein; [J] COG1544 Ribosome-associated protein Y (PSrp-1). (123 aa)    
Predicted Functional Partners:
rpsU
[J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.881
EDY80427.1
[J] COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
   0.864
rpsI
[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.856
rpmA
[J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.855
rpmC
[J] COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.854
EDY80420.1
[J] COG0228 Ribosomal protein S16.
    
 
 0.853
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.852
rpsE
Ribosomal protein S5, putative; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.852
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.851
rpmG
[J] COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.846
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.