STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84639.1[R] COG5012 Predicted cobalamin binding protein. (210 aa)    
Predicted Functional Partners:
EDY82469.1
Homocysteine S-methyltransferase, putative; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
 
 0.985
EDY83223.1
Pterin binding enzyme domain protein; [E] COG1410 Methionine synthase I, cobalamin-binding domain.
 
 0.983
EDY83965.1
[H] COG0407 Uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 0.875
EDY83340.1
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.858
EDY83365.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
 
0.840
EDY85243.1
Pterin binding enzyme, putative; [E] COG1410 Methionine synthase I, cobalamin-binding domain.
 
 
 0.839
EDY83201.1
Hypothetical protein.
 
     0.798
EDY82830.1
CobW/P47K family protein; [R] COG0523 Putative GTPases (G3E family).
 
  
 0.764
EDY82844.1
2Fe-2S iron-sulfur cluster binding domain protein; [R] COG3894 Uncharacterized metal-binding protein.
 
    0.722
EDY82737.1
Hypothetical protein; [R] COG3894 Uncharacterized metal-binding protein.
 
    0.720
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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