STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84656.1Oligopeptide/dipeptide transporter domain family protein; [R] COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily. (283 aa)    
Predicted Functional Partners:
EDY84369.1
ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.995
EDY81980.1
ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.986
EDY82152.1
[R] COG4239 ABC-type uncharacterized transport system, permease component.
  
 0.981
EDY83843.1
ABC transporter, permease protein, putative; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.955
EDY83117.1
[R] COG4174 ABC-type uncharacterized transport system, permease component.
 
 0.952
EDY81508.1
ABC transporter, permease protein, putative; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.938
EDY80649.1
ABC transporter, ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
   
 
0.926
EDY83290.1
ABC transporter, ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
   
 
0.925
EDY84611.1
ABC transporter, ATP-binding protein, putative; [R] COG0457 FOG: TPR repeat.
   
 
0.925
EDY85059.1
ABC transporter, ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 
0.919
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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