STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84741.1Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (365 aa)    
Predicted Functional Partners:
EDY81703.1
TonB-dependent receptor plug domain protein; [H] COG4206 Outer membrane cobalamin receptor protein.
     0.771
EDY82289.1
Ornithine cyclodeaminase/mu-crystallin family; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
     0.769
EDY83629.1
ExsB family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
     0.740
EDY82444.1
Acyl-CoA dehydrogenase, C-terminal domain protein; [I] COG1960 Acyl-CoA dehydrogenases.
       0.732
EDY84003.1
[IQ] COG0236 Acyl carrier protein; Phosphopantetheine attachment site, putative.
       0.732
EDY82064.1
AMP-binding enzyme domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
       0.712
EDY83550.1
AMP-binding enzyme, putative; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.689
EDY85226.1
Methyltransferase domain family; [QR] COG0500 SAM-dependent methyltransferases.
       0.689
EDY83746.1
4'-phosphopantetheinyl transferase superfamily; [H] COG2091 Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
     0.576
ureB
Urease, beta subunit; [E] COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
  
  
 0.428
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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