STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84769.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
EDY82683.1
Hypothetical protein.
  
 
 0.842
EDY82189.1
Glycosyl transferase, group 2 family protein; [R] COG1216 Predicted glycosyltransferases.
 
 
 0.641
EDY82043.1
Hypothetical protein; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
 
 
 0.598
EDY83596.1
3-deoxy-D-manno-octulosonic-acid transferase subfamily, putative; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.563
EDY83972.1
Hypothetical protein.
       0.543
EDY85167.1
Hypothetical protein; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
  
 
 0.529
EDY82899.1
Hypothetical protein.
    
  0.513
EDY81584.1
ABC1 family protein; [R] COG0661 Predicted unusual protein kinase.
   
 
 0.490
EDY83926.1
[R] COG0661 Predicted unusual protein kinase.
   
 
 0.490
EDY85213.1
[E] COG0685 5,10-methylenetetrahydrofolate reductase.
 
    0.487
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.