STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY84835.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
EDY82859.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
       0.773
EDY83353.1
Cupin superfamily; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
       0.574
EDY84790.1
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, putative; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.536
EDY80986.1
Hypothetical protein; [P] COG0607 Rhodanese-related sulfurtransferase.
       0.529
EDY83437.1
Phosphotransferase enzyme family, putative; [R] COG2334 Putative homoserine kinase type II (protein kinase fold).
       0.486
EDY83177.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.484
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.