STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85003.1[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1. (259 aa)    
Predicted Functional Partners:
EDY82145.1
Hypothetical protein.
    
 0.769
EDY83699.1
[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
 
 
0.732
htpG
Hsp90 protein; Molecular chaperone. Has ATPase activity.
   
 0.686
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.611
EDY81436.1
Glycosyl transferase, group 1 family protein; [M] COG0438 Glycosyltransferase.
       0.572
EDY80999.1
Hypothetical protein; [R] COG1611 Predicted Rossmann fold nucleotide-binding protein.
       0.533
EDY85278.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, putative; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
 
  0.470
EDY81572.1
Conserved hypothetical protein TIGR00147; [IR] COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
       0.467
EDY81967.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein; [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
 
 
  0.439
EDY82559.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein; [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
 
 
  0.439
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.