STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85035.1[S] COG4877 Uncharacterized protein conserved in bacteria. (53 aa)    
Predicted Functional Partners:
EDY84694.1
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.932
EDY84229.1
Glycosyl hydrolases family 2, sugar binding domain protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase.
       0.746
EDY82841.1
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
  
 0.440
EDY83027.1
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
  
 0.440
EDY83198.1
SPFH domain / Band 7 family protein; [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
  
 0.440
EDY80732.1
HflK protein; HflC and HflK could encode or regulate a protease.
  
  
 0.440
EDY84182.1
HflC protein; HflC and HflK could regulate a protease.
  
  
 0.440
EDY82566.1
Cold-shock' DNA-binding domain, putative; [K] COG1278 Cold shock proteins.
       0.407
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.