STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDY85087.1Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. (422 aa)    
Predicted Functional Partners:
EDY82634.1
Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.707
EDY84331.1
[C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
    
  0.704
EDY82531.1
SMP-30/Gluconolaconase/LRE-like region superfamily; [G] COG3386 Gluconolactonase.
       0.590
EDY83148.1
Exonuclease superfamily.
       0.442
EDY84764.1
Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases.
   
    0.431
Your Current Organism:
Verrucomicrobiae bacterium DG1235
NCBI taxonomy Id: 382464
Other names: V. bacterium DG1235, Verrucomicrobiae bacterium str. DG1235, Verrucomicrobiae bacterium strain DG1235, Verrucomicrobiales bacterium DG1235
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