Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDY82531.1 | EDY83148.1 | VDG1235_2154 | VDG1235_2772 | SMP-30/Gluconolaconase/LRE-like region superfamily; [G] COG3386 Gluconolactonase. | Exonuclease superfamily. | 0.566 |
EDY82531.1 | EDY85087.1 | VDG1235_2154 | VDG1235_4721 | SMP-30/Gluconolaconase/LRE-like region superfamily; [G] COG3386 Gluconolactonase. | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.590 |
EDY82634.1 | EDY84331.1 | VDG1235_2257 | VDG1235_3962 | Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | 0.995 |
EDY82634.1 | EDY85087.1 | VDG1235_2257 | VDG1235_4721 | Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.707 |
EDY83148.1 | EDY82531.1 | VDG1235_2772 | VDG1235_2154 | Exonuclease superfamily. | SMP-30/Gluconolaconase/LRE-like region superfamily; [G] COG3386 Gluconolactonase. | 0.566 |
EDY83148.1 | EDY85087.1 | VDG1235_2772 | VDG1235_4721 | Exonuclease superfamily. | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.442 |
EDY84331.1 | EDY82634.1 | VDG1235_3962 | VDG1235_2257 | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.995 |
EDY84331.1 | EDY85087.1 | VDG1235_3962 | VDG1235_4721 | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.704 |
EDY84764.1 | EDY85087.1 | VDG1235_4397 | VDG1235_4721 | Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases. | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | 0.431 |
EDY85087.1 | EDY82531.1 | VDG1235_4721 | VDG1235_2154 | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | SMP-30/Gluconolaconase/LRE-like region superfamily; [G] COG3386 Gluconolactonase. | 0.590 |
EDY85087.1 | EDY82634.1 | VDG1235_4721 | VDG1235_2257 | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | Phosphate acetyltransferase, putative; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.707 |
EDY85087.1 | EDY83148.1 | VDG1235_4721 | VDG1235_2772 | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | Exonuclease superfamily. | 0.442 |
EDY85087.1 | EDY84331.1 | VDG1235_4721 | VDG1235_3962 | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit. | 0.704 |
EDY85087.1 | EDY84764.1 | VDG1235_4721 | VDG1235_4397 | Integron integrase subfamily; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. | Hypothetical protein; [R] COG1040 Predicted amidophosphoribosyltransferases. | 0.431 |